Home

Tripal

TripalLogo.png

Tripal is a collection of open-source freely available Drupal modules under development at CUGI. These modules serve as a web interface for the GMOD Chado database. Tripal intially started as a web front-end for the Marine Genomics Project (MG.org). Work on the interface is currently ongoing for the MG.org project as well as the Fagaceae Genomics Web, and other CUGI projects.

Download Tripal
Note: Tripal is currently in beta stage meaning you may encounter bugs or unanticipated behavior. We encourage all users to provide feedback to help improve the tool.

Support

  • Tripal on GMOD

    • Tripal has an information page on the GMOD site as well. Click the link above to view.

  • Tripal v6.x-0.1b Bug Fixes

    • A few bugs have been identified in this release. Click the link above for fixes. An updated release will be coming soon.

  • Tripal Users Guide.pdf

    • A user's guide is available with instructions for installing and configuration a Tripal based site.

  • Tripal Mailing List

    • A community mailing list provided by GMOD allows end-users to post questions or comments. All subscribed users may respond. Tripal developers will monitor and respond to questions as they are able.

Modules Under Construction
The following modules are currently under construction at CUGI

  • A generic Ontology Module for management and visualization of ontolgies
  • A GO module for associating features with Gene Ontology terms
  • A KEGG module for associating features with biological pathways
  • An Interpro module for associating features with protein domains and pathways
  • A Search module to allow for download of search results in FASTA format

User Contributed Modules
Tripal is extendable. As users in the community generate new extensions those will be posted here for download.

Helper Scripts

  • split_blastxml-0.1.2.pl

    • The Blast Analysis module requires that blast results intended for assistance in manual curation of features be formated in XML and then divided into a specific directory structure before it can be displayed properly. This script parses and generates the necessary directory structure.

  • ace2gff3-1.0.1.pl

    • The Unigene Analysis module uses a specific set of cvterms and a specific relationship between features in the featureloc table. This script reads in a .ace file from an assembler such as CAP3 and generates a GFF file. Only .ace files supported by BioPerl can be used.