Research Activities and Collaborations

a shrimp on the ocean floor
Marine Genomics Consortium

Researchers from institutions across South Carolina are using cyber-enabled genomic and bioinformatic approaches to predict and address the impact of climate change and environmental stressors on ecosystems.

Genomic Tool Development for the Fagaceae

The chestnut genome is being leveraged to learn more about North American hardwood trees such as Oak and Beech and to breed an American chestnut resistant to Chestnut Blight Disease.

rainbow trout
Rainbow Trout Physical Map

Dr. Yniv Palti at the USDA ARS has created the first physical map for the rainbow trout.

green, red, and yellow microarray spots
Chen Lab Research: Bioinformatics, Functional Genomics and Macrophage Signaling

Chen lab research centers on understanding how cells communicate, with a focus on signal transduction by human macrophages and the host-pathogen interaction.

gene network
Gene Co-Expression Networks

The Feltus lab is combining co-expression networks with biological data to discover and validate sub-networks of coordinated genes with a common function.

a jewel wasp
Comparative Genomics on the Insect Antennapedia Complex

ANT-C, the Antennapedia homeotic gene complex, contains anterior Hox genes that specify the identity of head and mouthpart segments.

a silversword plant
Adaptive Evolution in the Hawaiian Silversword Alliance

The Hawaiian silversword alliance has undergone spectacular adaptive diversification despite minimal genetic differentiation.

a cotton boll
Cotton Marker Database

This database provides centralized access to all publicly available SSRs from cotton as well as the standardized panel screened data for many of these microsatellites.

a strawberry
Genomic Research in Strawberries

The value of strawberry production in the United States was over 1.5 billion dollars in 2006. Lack of genomic resources in this important crop has hampered efforts to breed better varieties.

a purple mimulus flower
Mimulus Fingerprinting and Sequencing

The genus Mimulus is a model organism for flowering plants. Its ecological and phenotypic diversity make it an exemplary candidate for ecological and evolutionary genetics.

a purple and white aquilegia flower
Aquilegia Physical Mapping and BAC-End Sequencing

Species in the flowering plant genus Aquilegia have undergone a very recent adaptive radiation and present a unique opportunity to investigate the molecular genetic changes underlying adaptations.